Publications



Plastic waste as a novel substrate for Industrial Biotechnology

In: Microbial Biotechnology, 2015, 8, Thematic Issue: Fungal Biotechnology, 900–903

Defined Microbial Mixed Culture for Utilization of Polyurethane Monomers

In: American Chemical Society (ACS) Sustainable Chemistry & Engineering

Development of synthetic biology tools for Pseudomonas putida

In: Apprimus Verlag, Applied Microbiology Volume 23

ISBN: 9783863598990

Phasin interactome reveals the interplay of PhaF with the polyhydroxyalkanoate transcriptional regulatory protein PhaD in Pseudomonas putida

In: Environmental Microbiology

Biocatalytic recycling of polyethylene terephthalate plastic

In: Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences

Characterization of Context-Dependent Effects on Synthetic Promoters

In: Frontiers in Bioengineering and Biotechnology (2020), 8(551)

ISBN: 22964185

Engineered PQQ-Dependent Alcohol Dehydrogenase for the Oxidation of 5-(Hydroxymethyl)furoic Acid

  • Matthias Wehrmann
  • Eslam M. Elsayed
  • Laura Bendz
  • Alexander Lepak
  • Johannes Schwabe
  • Gert Bange
  • Janosch Klebensberger
  • Dr. Nick Wierckx
  • Sebastian Köbbing

In: ACS Catalysis

ISBN: 21555435

Dissecting the Polyhydroxyalkanoate-Binding Domain of the PhaF Phasin: Rational Design of a Minimized Affinity Tag

  • Aranzazu Mato
  • Francisco G. Blanco
  • Beatriz Maestro
  • Jesús M. Sanz
  • Jesús Pérez-Gil
  • M. Auxiliadora Prieto

In: Applied and Environmental Microbiology, 10.1128/AEM.00570-20

ISBN: 00992240

A quantitative method for proteome reallocation using minimal regulatory interventions

In: Nature Chemical Biology, 16(3):1026-1033

ISBN: 15524450

Toward Biorecycling: Isolation of a Soil Bacterium That Grows on a Polyurethane Oligomer and Monomer

In: Frontiers in Microbiolology

Bio-upcycling of polyethylene terephthalate

In: Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA

Unraveling 1,4-Butanediol Metabolism in Pseudomonas putida KT2440

In: Frontiers in microbiology 11, 382

Exploiting the Natural Diversity of RhlA Acyltransferases for the Synthesis of the Rhamnolipid Precursor 3-(3-Hydroxyalkanoyloxy)Alkanoic Acid

  • Andrea Germer
  • Conrad Müller
  • Beate Behrens
  • Christian Vosse
  • Karen Scholz
  • Matti Froning
  • Heiko Hayen
  • Prof. Lars M. Blank
  • Till Tiso

In: Applied and Environmental Microbiology

ISBN: 00992240

MEMOTE for standardized genome-scale metabolic model testing

  • Christian Lieven
  • Moritz E. Beber
  • Brett G. Olivier
  • Frank T. Bergmann
  • Meric Ataman
  • Parizad Babaei
  • Jennifer A. Bartel
  • Siddharth Chauhan
  • Kevin Correia
  • Christian Diener
  • Andreas Dräger
  • Birgitta E. Ebert
  • Janaka N. Edirisinghe
  • José P. Faria
  • Adam M. Feist
  • Georgios Fengos
  • Ronan M. T. Fleming
  • Beatriz García-Jiménez
  • Vassily Hatzimanikatis
  • Wout van Helvoirt
  • Christopher S. Henry
  • Henning Hermjakob
  • Markus J. Herrgård
  • Ali Kaafarani
  • Hyun Uk Kim
  • Zachary King
  • Steffen Klamt
  • Edda Klipp
  • Matthias König
  • Meiyappan Lakshmanan
  • Dong-Yup Lee
  • Sang Yup Lee
  • Sunjae Lee
  • Nathan E. Lewis
  • Filipe Liu
  • Hongwu Ma
  • Daniel Machado
  • Radhakrishnan Mahadevan
  • Paulo Maia
  • Adil Mardinoglu
  • Gregory L. Medlock
  • Jonathan M. Monk
  • Jens Nielsen
  • Keld Nielsen
  • Juan Nogales
  • Intawat Nookaew
  • Bernhard O. Palsson
  • Jason A. Papin
  • Kiran R. Patil
  • Mark Poolman
  • Nathan D. Price
  • Osbaldo Resendis-Antonio
  • Anne Richelle
  • Isabel Rocha
  • Benjamín J. Sánchez
  • Peter J. Schaap
  • Rahuman S. Malik Sheriff
  • Saeed Shoaie
  • Nikolaus Sonnenschein
  • Bas Teusink
  • Paulo Vilaça
  • Jon Olav Vik
  • Judith A. H. Wodke
  • Joana C. Xavier
  • Qianqian Yuan
  • Maksim Zakhartsev
  • Cheng Zhang
  • Prof. Lars M. Blank

In: Nature Biotechnology, 10.1038/s41587-020-0446-y

Conformational fitting of a flexible oligomeric substrate does not explain the enzymatic PET degradation

In: Nature Communications 2019, 10(5581)

ISBN: 20411723

Biocatalytic Degradation Efficiency of Postconsumer Polyethylene Terephthalate Packaging Determined by Their Polymer Microstructures

In: Advanced Science 2019, 6(1900491)

ISBN: 21983844

Quantification of outer membrane vesicles: a potential tool to compare response in Pseudomonas putida KT2440 to stress caused by alkanols

In: Applied Microbiology and Biotechnology

Insights into an alternative pathway for glycerol metabolism in a glycerol kinase deficient Pseudomonas putida KT2440

In: bioRxiv, 10.1101/567230

Fast turbidimetric assay for analyzing the enzymatic hydrolysis of polyethylene terephthalate model substrates

In: Biotechnology Journal, Wiley - VCH Verlag GmbH & CO. KGaA

ISBN: 18606768

Engineering Translational Resource Allocation Controllers: Mechanistic Models, Design Guidelines, and Potential Biological Implementations

In: ACS Synthetic Biology

ISBN: 21615063

Biodegradable Plastic Blends Create New Possibilities for End-of-Life Management of Plastics but They Are Not a Panacea for Plastic Pollution

In: Environmental Science & Technology 2018 52 (18), 10441-10452

Engineering Pseudomonas putida KT2440 for efficient ethylene glycol utilization

  • Mary Ann Franden
  • Lahiru N. Jayakody
  • Neil J. Wagner
  • Nicholas S. Cleveland
  • William E. Michener
  • Bernhard Hauer
  • Janosch Klebensberger
  • Gregg T. Beckham
  • Wing-Jin Li
  • Prof. Lars M. Blank
  • Dr. Nick Wierckx

In: Metabolic Engineering, Volume 48, 197-207

ISBN: 10967176

Memote: A community driven effort towards a standardized genome-scale metabolic model test suite

  • Christian Lieven
  • Morith E. Beber
  • Brett G. Olivier
  • Frank T. Bergmann
  • Meric Ataman
  • Parizad Babaei
  • Jennifer A. Bartell
  • Siddharth Chauhan
  • Kevin Correia
  • Christian Diener
  • Andreas Dräger
  • Birgitta E. Ebert
  • Janaka N. Edirisinghe
  • José P. Faria
  • Adam M. Feist
  • Georgios Fengos, Ronan M. T. Fleming
  • Beatriz García-Jiménez
  • Vassily Hatzimanikatis
  • Wout van Helvoirt
  • Christopher S. Henry
  • Henning Hermjakob
  • Markus J. Herrgård
  • Ali Kaafarani, Hyun Uk Kim
  • Zachary King
  • Steffen Klamt
  • Edda Klipp
  • Jasper J. Koehorst
  • Matthias König
  • Meiyappan Lakshmanan
  • Dong-Yup Lee
  • Sang Yup Lee
  • Sunjae Lee
  • Nathan E. Lewis
  • Filipe Liu
  • Hongwu Ma
  • Daniel Machado
  • Radhakrishnan Mahadevan
  • Paulo Maia
  • Adil Mardinoglu
  • Gregory L. Medlock
  • Jonathan M. Monk
  • Jens Nielsen
  • Lars Keld Nielsen
  • Juan Nogales
  • Intawat Nookaew
  • Bernhard O. Palsson
  • Jason A. Papin
  • Kiran R. Patil
  • Mark Poolman
  • Nathan D. Price
  • Osbaldo Resendis-Antonio
  • Anne Richelle
  • Isabel Rocha
  • Benjamín J. Sánchez
  • Peter J. Schaap
  • Rahuman S. Malik Sheriff
  • Saeed Shoaie
  • Nikolaus Sonnenschein
  • Bas Teusink
  • Paulo Vilaça
  • Jon Olav Vik
  • Judith A. H. Wodke
  • Joana C. Xavier
  • Qianqian Yuan
  • Maksim Zakhartsev
  • Cheng Zhang
  • Prof. Lars M. Blank

In: bioRxiv, 10.1101/350991

Prospects for harnessing biocide resistance for bioremediation and detoxification

In: Science Vol. 360, Issue 6390, pp. 743-746

ISBN: 00368075

Immediate response mechanisms of Gram-negative solvent-tolerant bacteria to cope with environmental stress: cis-trans isomerization of unsaturated fatty acids and outer membrane vesicle secretion

In: Applied Microbiology and Biotechnology

ISBN: 01757598

Immediate response mechanisms of Gram-negative solvent tolerant bacteria to cope with environmental stress: cis-trans isomerization of unsaturated fatty acids and outer membrane vesicle secretion

In: Applied Microbiology and Biotechnology

Dynamic allocation of orthogonal ribosomes facilitates uncoupling of co-expressed genes

  • Alexander P. S. Darlington
  • Juhyun Kim
  • Declan G. Bates
  • Dr. Jose Jimenez

In: Nature Communications

ISBN: 20411723

Designer rhamnolipids by reduction of congener diversity: production and characterization

  • Rabea Zauter
  • Hannah Tulke
  • Bernd Leuchtle
  • Beate Behrens
  • Andreas Wittgens
  • Frank Rosenau
  • Heiko Hayen
  • Prof. Lars M. Blank
  • Till Tiso
  • Wing-Jin Li

In: Microbial Cell Factories 16:225

ISBN: 14752859

Regulation of solvent tolerance in Pseudomonas putida S12 mediated by mobile elements

In: Microbial Biotechnology (2017)

ISBN: 17517915

Cooperation in microbial communities and their biotechnological applications

  • Dr. Matteo Cavaliere
  • Dr. Song Feng
  • Prof. Dr. Orkun Soyer
  • Dr. Jose Jimenez

In: Environmental Microbiology 19(8), 2949-2963

ISBN: 14622920

About how to capture and exploit the CO2 surplus that nature, per se, is not capable of fixing

In: Microbial Biotechnology Volume 10, Issue 5

ISBN: 17517915

Microbial biotechnology addressing the plastic waste disaster

In: Microbial Biotechnology 2017

ISBN: 17517915

Let´s talk about flux or the importance of (intracellular) reaction rates

In: Microbial Biotechnology Vol. 10.1 2017 (p. 28 - 30)

Rhamnolipids: Production, Performance, and Application

  • Dr. Stephan Thies
  • Michaela Müller
  • MSc Lora Tsvetanova
  • Dr. Laura Carraresi
  • Prof. Dr. Stefanie Bröring
  • Prof. Dr. Karl-Erich Jaeger
  • Prof. Lars M. Blank
  • Till Tiso

In: Handbook of Hydrocarbon and Lipid Microbiology, Springer International Publishing, 2017

ISBN: 9783319314211

Microbial enzymes for the recycling of recalcitrant petroleum-based plastics: how far are we?

In: Microbial Biotechnology Vol. 10, 2017 (p.15)

ISBN: 17517915

Biocatalysis as a green route for recycling the recalcitrant plastic polyethylene terephthalate

In: Microbial Biotechnology Vol.10, 2017 (p.6)

ISBN: 17517915

Biogenesis of Medium-Chain-Length Polyhydroxyalkanoates

In: Biogenesis of Fatty Acids, Lipids and Membranes, p. 1 - 25

ISBN: 9783319436760

Shedding light on the black box models of the cell

In: Microbial Biotechnology (January 2017), 43 - 45

ISBN: 17517915

Properties of alternative microbial hosts used in synthetic biology: towards the design of a modular chassis

In: Portland Press (2016)

To be, or not to be biodegradable... that is the question for the bio-based plastics

In: Microbial Biotechnology (2016), 9 (5), 652 – 657

Tn7-Based Device for Calibrated Heterologous Gene Expression in Pseudomonas putida

In: ACS Synth. Biol., 2015, 4 (12), pp. 1341–1351

Isolation and characterization of different promising fungi for biological waste management of polyurethanes

In: Microbial Biotechnology, p. 1-12

Interfacial Activity of Phasin PhaF from Pseudomonas putida KT2440 at Hydrophobic–Hydrophilic Biointerfaces

In: Langmuir 35/3, 678–686

ISBN: 07437463

Role of leucine zipper-like motifs in the oligomerization of Pseudomonas putida phasins

In: Biochimica et Biophysica Acta (BBA) - General Subjects, 1863/2, 362-370

ISBN: 03044165

Molecular Insights into the Physical Adsorption of Amphiphilic Protein PhaF onto Copolyester Surfaces

In: Biomacromolecules

ISBN: 15257797

Microbial Genes for a Circular and Sustainable Bio-PET Economy

In: Genes

ISBN: 20734425

Plastic Biodegradation: Challenges and Opportunities

In: Handbook of Hydrocarbon and Lipid Microbiology

ISBN: 9783319445359