Publications
Plastic waste as a novel substrate for Industrial Biotechnology
In: Microbial Biotechnology, 2015, 8, Thematic Issue: Fungal Biotechnology, 900–903
Defined Microbial Mixed Culture for Utilization of Polyurethane Monomers
- Romualdus Nugraha Catur Utomo
- Moritz Doeker
- Andreas Jupke
- Dr. Christian Eberlein
- Dr. Hermann J. Heipieper
- Dr. Nick Wierckx
- Prof. Lars M. Blank
- Till Tiso
- Wing-Jin Li
In: American Chemical Society (ACS) Sustainable Chemistry & Engineering
Development of synthetic biology tools for Pseudomonas putida
In: Apprimus Verlag, Applied Microbiology Volume 23
ISBN: 9783863598990
Phasin interactome reveals the interplay of PhaF with the polyhydroxyalkanoate transcriptional regulatory protein PhaD in Pseudomonas putida
- Natalia A. Tarazona
- Ana M. Hernández-Arriaga
- Ryan Kniewel
- Dr. M. Auxiliadora Prieto
Biocatalytic recycling of polyethylene terephthalate plastic
In: Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences
Characterization of Context-Dependent Effects on Synthetic Promoters
In: Frontiers in Bioengineering and Biotechnology (2020), 8(551)
ISBN: 22964185
Engineered PQQ-Dependent Alcohol Dehydrogenase for the Oxidation of 5-(Hydroxymethyl)furoic Acid
- Matthias Wehrmann
- Eslam M. Elsayed
- Laura Bendz
- Alexander Lepak
- Johannes Schwabe
- Gert Bange
- Janosch Klebensberger
- Dr. Nick Wierckx
- Sebastian Köbbing
In: ACS Catalysis
ISBN: 21555435
Dissecting the Polyhydroxyalkanoate-Binding Domain of the PhaF Phasin: Rational Design of a Minimized Affinity Tag
In: Applied and Environmental Microbiology, 10.1128/AEM.00570-20
ISBN: 00992240
A quantitative method for proteome reallocation using minimal regulatory interventions
- Gustavo Lastiri-Pancardo
- Jonathan S. Mercado-Hernández
- José Utrilla
- Dr. Jose Jimenez
- Dr. Juhyun Kim
Toward Biorecycling: Isolation of a Soil Bacterium That Grows on a Polyurethane Oligomer and Monomer
- Dietmar H. Pieper
- Dirk Tischler
- Uwe Kappelmeyer
- Anna Katharina Atanasoff-Kardjalieff
- Tabea Schmidgall
- Andrea Colina Blanco
- María José Cárdenas Espinosa
- Dr. Christian Eberlein
- Dr. Hermann J. Heipieper
In: Frontiers in Microbiolology
Bio-upcycling of polyethylene terephthalate
- Katja Schröder
- Annett Honak
- Mengying Jiang
- Niall Beagan
- Prof. Dr. Wolfgang Zimmermann
- Prof. Kevin O'Connor
- Prof. Lars M. Blank
- Prof. Luc Avérous
- Rémi Perrin
- Till Tiso
- Dr. Tanja Narancic
- Dr. Shane Kenny
- Dr. Eric Pollet
- Dr. Nick Wierckx
- Dr. Ren Wei
In: Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
Unraveling 1,4-Butanediol Metabolism in Pseudomonas putida KT2440
- Paul-Joachim Niehoff
- Dr. Nick Wierckx
- Dr. Shane Kenny
- Dr. Tanja Narancic
- Prof. Kevin O'Connor
- Prof. Lars M. Blank
- Wing-Jin Li
In: Frontiers in microbiology 11, 382
Exploiting the Natural Diversity of RhlA Acyltransferases for the Synthesis of the Rhamnolipid Precursor 3-(3-Hydroxyalkanoyloxy)Alkanoic Acid
- Andrea Germer
- Conrad Müller
- Beate Behrens
- Christian Vosse
- Karen Scholz
- Matti Froning
- Heiko Hayen
- Prof. Lars M. Blank
- Till Tiso
In: Applied and Environmental Microbiology
ISBN: 00992240
MEMOTE for standardized genome-scale metabolic model testing
- Christian Lieven
- Moritz E. Beber
- Brett G. Olivier
- Frank T. Bergmann
- Meric Ataman
- Parizad Babaei
- Jennifer A. Bartel
- Siddharth Chauhan
- Kevin Correia
- Christian Diener
- Andreas Dräger
- Birgitta E. Ebert
- Janaka N. Edirisinghe
- José P. Faria
- Adam M. Feist
- Georgios Fengos
- Ronan M. T. Fleming
- Beatriz García-Jiménez
- Vassily Hatzimanikatis
- Wout van Helvoirt
- Christopher S. Henry
- Henning Hermjakob
- Markus J. Herrgård
- Ali Kaafarani
- Hyun Uk Kim
- Zachary King
- Steffen Klamt
- Edda Klipp
- Matthias König
- Meiyappan Lakshmanan
- Dong-Yup Lee
- Sang Yup Lee
- Sunjae Lee
- Nathan E. Lewis
- Filipe Liu
- Hongwu Ma
- Daniel Machado
- Radhakrishnan Mahadevan
- Paulo Maia
- Adil Mardinoglu
- Gregory L. Medlock
- Jonathan M. Monk
- Jens Nielsen
- Keld Nielsen
- Juan Nogales
- Intawat Nookaew
- Bernhard O. Palsson
- Jason A. Papin
- Kiran R. Patil
- Mark Poolman
- Nathan D. Price
- Osbaldo Resendis-Antonio
- Anne Richelle
- Isabel Rocha
- Benjamín J. Sánchez
- Peter J. Schaap
- Rahuman S. Malik Sheriff
- Saeed Shoaie
- Nikolaus Sonnenschein
- Bas Teusink
- Paulo Vilaça
- Jon Olav Vik
- Judith A. H. Wodke
- Joana C. Xavier
- Qianqian Yuan
- Maksim Zakhartsev
- Cheng Zhang
- Prof. Lars M. Blank
In: Nature Biotechnology, 10.1038/s41587-020-0446-y
Conformational fitting of a flexible oligomeric substrate does not explain the enzymatic PET degradation
- Chen Song
- Daniel Gräsing
- Pavlo Bielytskyi
- Dominique Böttcher
- Jörg Matysik
- Uwe T. Bornscheuer
- Tobias Schneider
- Prof. Dr. Wolfgang Zimmermann
- Dr. Ren Wei
In: Nature Communications 2019, 10(5581)
ISBN: 20411723
Biocatalytic Degradation Efficiency of Postconsumer Polyethylene Terephthalate Packaging Determined by Their Polymer Microstructures
- Daniel Breite
- Chen Song
- Daniel Gräsing
- Tina Ploss
- Ruth Schwerdtfeger
- Jörg Matysik
- Agnes Schulze
- Prof. Dr. Wolfgang Zimmermann
- Patrick Hille
- Dr. Ren Wei
Quantification of outer membrane vesicles: a potential tool to compare response in Pseudomonas putida KT2440 to stress caused by alkanols
- Álvaro Escobar Doncel
- Stephan Starke
- Francesco Scarabotti
- Dr. Christian Eberlein
- Dr. Hermann J. Heipieper
In: Applied Microbiology and Biotechnology
Insights into an alternative pathway for glycerol metabolism in a glycerol kinase deficient Pseudomonas putida KT2440
Fast turbidimetric assay for analyzing the enzymatic hydrolysis of polyethylene terephthalate model substrates
- Matheus Regis Belisário-Ferrari
- Annett Honak
- Dr. Ren Wei
- Prof. Dr. Wolfgang Zimmermann
- Tobias Schneider
In: Biotechnology Journal, Wiley - VCH Verlag GmbH & CO. KGaA
ISBN: 18606768
Engineering Translational Resource Allocation Controllers: Mechanistic Models, Design Guidelines, and Potential Biological Implementations
- Alexander P. S. Darlington
- Declan G. Bates
- Dr. Jose Jimenez
- Dr. Juhyun Kim
In: ACS Synthetic Biology
ISBN: 21615063
Biodegradable Plastic Blends Create New Possibilities for End-of-Life Management of Plastics but They Are Not a Panacea for Plastic Pollution
- Steven Verstichel
- Srinivasa Reddy Chaganti
- Laura Morales-Gamez
- Bruno De Wilde
- Ramesh Babu Padamati
- Dr. Shane Kenny
- Dr. Tanja Narancic
- Prof. Kevin O'Connor
In: Environmental Science & Technology 2018 52 (18), 10441-10452
Engineering Pseudomonas putida KT2440 for efficient ethylene glycol utilization
- Mary Ann Franden
- Lahiru N. Jayakody
- Neil J. Wagner
- Nicholas S. Cleveland
- William E. Michener
- Bernhard Hauer
- Janosch Klebensberger
- Gregg T. Beckham
- Wing-Jin Li
- Prof. Lars M. Blank
- Dr. Nick Wierckx
In: Metabolic Engineering, Volume 48, 197-207
ISBN: 10967176
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite
- Christian Lieven
- Morith E. Beber
- Brett G. Olivier
- Frank T. Bergmann
- Meric Ataman
- Parizad Babaei
- Jennifer A. Bartell
- Siddharth Chauhan
- Kevin Correia
- Christian Diener
- Andreas Dräger
- Birgitta E. Ebert
- Janaka N. Edirisinghe
- José P. Faria
- Adam M. Feist
- Georgios Fengos, Ronan M. T. Fleming
- Beatriz García-Jiménez
- Vassily Hatzimanikatis
- Wout van Helvoirt
- Christopher S. Henry
- Henning Hermjakob
- Markus J. Herrgård
- Ali Kaafarani, Hyun Uk Kim
- Zachary King
- Steffen Klamt
- Edda Klipp
- Jasper J. Koehorst
- Matthias König
- Meiyappan Lakshmanan
- Dong-Yup Lee
- Sang Yup Lee
- Sunjae Lee
- Nathan E. Lewis
- Filipe Liu
- Hongwu Ma
- Daniel Machado
- Radhakrishnan Mahadevan
- Paulo Maia
- Adil Mardinoglu
- Gregory L. Medlock
- Jonathan M. Monk
- Jens Nielsen
- Lars Keld Nielsen
- Juan Nogales
- Intawat Nookaew
- Bernhard O. Palsson
- Jason A. Papin
- Kiran R. Patil
- Mark Poolman
- Nathan D. Price
- Osbaldo Resendis-Antonio
- Anne Richelle
- Isabel Rocha
- Benjamín J. Sánchez
- Peter J. Schaap
- Rahuman S. Malik Sheriff
- Saeed Shoaie
- Nikolaus Sonnenschein
- Bas Teusink
- Paulo Vilaça
- Jon Olav Vik
- Judith A. H. Wodke
- Joana C. Xavier
- Qianqian Yuan
- Maksim Zakhartsev
- Cheng Zhang
- Prof. Lars M. Blank
In: bioRxiv, 10.1101/350991
Prospects for harnessing biocide resistance for bioremediation and detoxification
- Siavash Atashgahi
- Irene Sánchez-Andrea
- Jan R. van der Meer
- Alfons J.M. Stams
- Hauke Smidt
- Dr. Hermann J. Heipieper
In: Science Vol. 360, Issue 6390, pp. 743-746
ISBN: 00368075
Immediate response mechanisms of Gram-negative solvent-tolerant bacteria to cope with environmental stress: cis-trans isomerization of unsaturated fatty acids and outer membrane vesicle secretion
- Thomas Baumgarten
- Stephan Starke
- Dr. Christian Eberlein
- Dr. Hermann J. Heipieper
In: Applied Microbiology and Biotechnology
ISBN: 01757598
Immediate response mechanisms of Gram-negative solvent tolerant bacteria to cope with environmental stress: cis-trans isomerization of unsaturated fatty acids and outer membrane vesicle secretion
- Thomas Baumgarten
- Stephan Starke
- Dr. Christian Eberlein
- Dr. Hermann J. Heipieper
In: Applied Microbiology and Biotechnology
Dynamic allocation of orthogonal ribosomes facilitates uncoupling of co-expressed genes
- Alexander P. S. Darlington
- Juhyun Kim
- Declan G. Bates
- Dr. Jose Jimenez
In: Nature Communications
ISBN: 20411723
Designer rhamnolipids by reduction of congener diversity: production and characterization
- Rabea Zauter
- Hannah Tulke
- Bernd Leuchtle
- Beate Behrens
- Andreas Wittgens
- Frank Rosenau
- Heiko Hayen
- Prof. Lars M. Blank
- Till Tiso
- Wing-Jin Li
In: Microbial Cell Factories 16:225
ISBN: 14752859
Regulation of solvent tolerance in Pseudomonas putida S12 mediated by mobile elements
- Dr. Rohola Hosseini
- Jannis Kuepper
- Prof. Dr. Johannes H. de Winde
- Dr. Nick Wierckx
- Prof. Lars M. Blank
- Sebastian Köbbing
In: Microbial Biotechnology (2017)
ISBN: 17517915
Cooperation in microbial communities and their biotechnological applications
- Dr. Matteo Cavaliere
- Dr. Song Feng
- Prof. Dr. Orkun Soyer
- Dr. Jose Jimenez
In: Environmental Microbiology 19(8), 2949-2963
ISBN: 14622920
About how to capture and exploit the CO2 surplus that nature, per se, is not capable of fixing
- Manuel S. Godoy
- Beatrice Mongili
- Debora Fino
- Dr. M. Auxiliadora Prieto
In: Microbial Biotechnology Volume 10, Issue 5
ISBN: 17517915
Microbial biotechnology addressing the plastic waste disaster
In: Microbial Biotechnology 2017
ISBN: 17517915
Let´s talk about flux or the importance of (intracellular) reaction rates
In: Microbial Biotechnology Vol. 10.1 2017 (p. 28 - 30)
Rhamnolipids: Production, Performance, and Application
- Dr. Stephan Thies
- Michaela Müller
- MSc Lora Tsvetanova
- Dr. Laura Carraresi
- Prof. Dr. Stefanie Bröring
- Prof. Dr. Karl-Erich Jaeger
- Prof. Lars M. Blank
- Till Tiso
In: Handbook of Hydrocarbon and Lipid Microbiology, Springer International Publishing, 2017
ISBN: 9783319314211
Microbial enzymes for the recycling of recalcitrant petroleum-based plastics: how far are we?
In: Microbial Biotechnology Vol. 10, 2017 (p.15)
ISBN: 17517915
Biocatalysis as a green route for recycling the recalcitrant plastic polyethylene terephthalate
In: Microbial Biotechnology Vol.10, 2017 (p.6)
ISBN: 17517915
Biogenesis of Medium-Chain-Length Polyhydroxyalkanoates
- Ryan Kniewel, Olga Revelles Lopez
- Dr. M. Auxiliadora Prieto
In: Biogenesis of Fatty Acids, Lipids and Membranes, p. 1 - 25
ISBN: 9783319436760
Shedding light on the black box models of the cell
In: Microbial Biotechnology (January 2017), 43 - 45
ISBN: 17517915
Properties of alternative microbial hosts used in synthetic biology: towards the design of a modular chassis
- Juhyun Kim, Elizabeth Saunders, Jaime González, Claudio Avignone-Rossa
- Dr. Jose Jimenez
- Dr. Manuel Salvador de Lara
In: Portland Press (2016)
To be, or not to be biodegradable... that is the question for the bio-based plastics
In: Microbial Biotechnology (2016), 9 (5), 652 – 657
Tn7-Based Device for Calibrated Heterologous Gene Expression in Pseudomonas putida
- Sebastian Zobel
- Ilaria Benedetti
- Lara Eisenbach
- Victor de Lorenzo
- Prof. Lars M. Blank
- Dr. Nick Wierckx
In: ACS Synth. Biol., 2015, 4 (12), pp. 1341–1351
Isolation and characterization of different promising fungi for biological waste management of polyurethanes
- Lucie Hoornaert
- Dr. Stéphanie Laurichesse
- Prof. Luc Avérous
- Prof. Vincent Phalip
In: Microbial Biotechnology, p. 1-12
Interfacial Activity of Phasin PhaF from Pseudomonas putida KT2440 at Hydrophobic–Hydrophilic Biointerfaces
- Aranzazu Mato
- Natalia A. Tarazona
- Alberto Hidalgo
- Antonio Cruz
- Mercedes Jiménez
- Jesús Pérez-Gil
- Dr. M. Auxiliadora Prieto
In: Langmuir 35/3, 678–686
ISBN: 07437463
Role of leucine zipper-like motifs in the oligomerization of Pseudomonas putida phasins
- Natalia A. Tarazona
- Beatriz Maestro
- Olga Revelles
- Jesús M. Sanz
- Dr. M. Auxiliadora Prieto
In: Biochimica et Biophysica Acta (BBA) - General Subjects, 1863/2, 362-370
ISBN: 03044165
Molecular Insights into the Physical Adsorption of Amphiphilic Protein PhaF onto Copolyester Surfaces
- Natalia A. Tarazona
- Rainhard Machatschek
- Burkhard Schulz
- Andreas Lendlein
- Dr. M. Auxiliadora Prieto
In: Biomacromolecules
ISBN: 15257797
Microbial Genes for a Circular and Sustainable Bio-PET Economy
- Abdulmutalib
- Gonzalez
- Faulon
- Dr. Alex Smith
- Dr. Jose Jimenez
- Dr. Juhyun Kim
- Dr. Manuel Salvador de Lara
- Dr. Ren Wei
- Prof. Dr. Wolfgang Zimmermann
In: Genes
ISBN: 20734425
Plastic Biodegradation: Challenges and Opportunities
In: Handbook of Hydrocarbon and Lipid Microbiology
ISBN: 9783319445359